The poster of AccuSNV - AI-based SNV calling tool for bacterial isolates

Demo output: SNV Table with Bar Charts - AccuSNV github link:

ID Bar charts SNV information Prediction information
P-11_O-Ec_S-BLOOD_C-001_D-0
P-11_O-Ec_S-BLOOD_C-002_D-0
P-11_O-Ec_S-BLOOD_C-003_D-0
P-11_O-Ec_S-BLOOD_C-004_D-0
P-11_O-Ec_S-BLOOD_C-005_D-0
P-11_O-Ec_S-BLOOD_C-006_D-0
P-11_O-Ec_S-BLOOD_C-007_D-0
P-11_O-Ec_S-BLOOD_C-008_D-0
P-11_O-Ec_S-BLOOD_C-009_D-0
P-11_O-Ec_S-BLOOD_C-010_D-0
P-11_O-Ec_S-BLOOD_C-011_D-0
P-11_O-Ec_S-BLOOD_C-012_D-0
P-11_O-Ec_S-BLOOD_C-013_D-0
P-11_O-Ec_S-BLOOD_C-014_D-0
P-11_O-Ec_S-BLOOD_C-015_D-0
P-11_O-Ec_S-BLOOD_C-016_D-0
P-11_O-Ec_S-BLOOD_C-017_D-0
P-11_O-Ec_S-BLOOD_C-018_D-0
P-11_O-Ec_S-BLOOD_C-019_D-0
P-11_O-Ec_S-BLOOD_C-020_D-0
P-11_O-Ec_S-BLOOD_C-021_D-0
P-11_O-Ec_S-BLOOD_C-022_D-0
P-11_O-Ec_S-BLOOD_C-023_D-0
P-11_O-Ec_S-BLOOD_C-024_D-0
P-11_O-Ec_S-STOOL_C-A7_D-1
P-11_O-Ec_S-STOOL_C-B7_D-1
P-11_O-Ec_S-STOOL_C-C7_D-1
P-11_O-Ec_S-STOOL_C-D7_D-1
P-11_O-Ec_S-STOOL_C-E7_D-1
P-11_O-Ec_S-STOOL_C-F7_D-1
P-11_O-Ec_S-STOOL_C-G7_D-1
P-11_O-Ec_S-STOOL_C-H7_D-1
P-11_O-Ec_S-STOOL_C-A8_D-1
P-11_O-Ec_S-STOOL_C-B8_D-1
P-11_O-Ec_S-STOOL_C-C8_D-1
P-11_O-Ec_S-STOOL_C-D8_D-1
P-11_O-Ec_S-STOOL_C-F8_D-1
P-11_O-Ec_S-STOOL_C-G8_D-1
P-11_O-Ec_S-STOOL_C-A9_D-1
P-11_O-Ec_S-STOOL_C-B9_D-1
1Chart 1 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) G T T T T T T T T G T T G T T G T G T T T T T G T G G G G G T T G G T G T G G G
324016 1 324016 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
338.0 113.0 R113L / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Inner membrane protein YebZ . EEMMPGIA_00314 0 0 0.478261 0 1
2Chart 2 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A
480971 1 480971 1 1 0.9999845 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 0 0 0.333333 0 1
3Chart 3 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A
1104514 1 1104514 1 1 0.9999944 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 0 0 0.179487 0 1
4Chart 4 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) T T T T T T T T T C T T C T T C T C T T T T T T T T T T T T T T T T T T T T T T
1759029 1 1759029 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
977.0 326.0 E326G / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
hypothetical protein . EEMMPGIA_01712 0 0 0.5 0 1
5Chart 5 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
2551778 1 2551778 1 1 0.99999774 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 0 0 0.615385 0 1
6Chart 6 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) G C C C C C C C C G C C G C C G C G C C C C C G G G G G G G G G G G G G G G G G
3011617 1 3011617 1 1 0.9999989 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 0 0 0.227273 0 1
7Chart 7 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) C T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T
3078879 1 3078879 1 1 0.9999938 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
306.0 102.0 . / S 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
putative 2-dehydro-3-deoxygalactonokinase DgoK1 . EEMMPGIA_02999 0 0 0.368421 0 1
8Chart 8 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G
3105226 1 3105226 1 1 0.9999937 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
1447.0 483.0 R483C / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Adenine deaminase . EEMMPGIA_03025 0 0 0.25641 0 1
9Chart 9 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) T G G G G G G G G T G G T G G T G T G G G G G T G G G N G G G G G G G G G G G G
3110222 1 3110222 1 1 0.99999964 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
200.0 67.0 K67T / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
hypothetical protein . EEMMPGIA_03029 0 0 0.5 0 1
10Chart 10 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C
3175184 1 3175184 1 1 0.9999634 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
206.0 69.0 S69N / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Autotransporter adhesin EhaG . EEMMPGIA_03090 0 0 0.358974 0 1
11Chart 11 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) C A A A A A A A A C A A C A A C A C A A A A A C C C C C C C C C C C C C C C C C
3288970 1 3288970 1 1 0.9999958 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
401.0 134.0 S134I / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Transcriptional regulator GadE . EEMMPGIA_03184 0 0 0.272727 0 1
12Chart 12 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) C G G G G G G G G C G G C G G C G C G G G G G C G G G N G G G G G G G G G G G G
3410970 1 3410970 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
64.0 22.0 R22G / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Transcriptional regulatory protein OmpR . EEMMPGIA_03293 0 0 0.352941 0 1
13Chart 13 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) C T T T T T T T T C T T C T T C T C T T T T T C T T T T T T T T T T T T T T T T
3925831 1 3925831 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 0 0 0.558824 0 1
14Chart 14 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
4227210 1 4227210 1 1 0.9999038 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
1562.0 521.0 A521V / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Peptidyl-lysine N-acetyltransferase PatZ . EEMMPGIA_04144 0 0 0.461538 0 1
15Chart 15 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) C T T T T T T T T C T T C T T C T C T T T T T C T T T T T T T T T T T T T T T T
4621072 1 4621072 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
1025.0 342.0 P342L / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Outer membrane porin C . EEMMPGIA_04498 0 0 0.441176 0 1
16Chart 16 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T N T N T T N T T
4995188 4 48668 1 1 0.9999999 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
465.0 155.0 L155F / N 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
Lipopolysaccharide core heptose(II)-phosphate phosphatase . EEMMPGIA_04902 0 0 0.684211 0 1
17Chart 17 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) A A A A A A A A A A A A A A A A A A A A A A A A A T T T A T A A N T N A N N T T
4997916 4 51396 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 1 1 0.870968 0 0
18Chart 18 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) T G G G G G G G G T G G T G G T G T G G G G G T G T T T T T G G N T N T N N T T
4997917 4 51397 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / P 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 1 1 0.863636 0 0
19Chart 19 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) N C C C C N N C C C N N C C C C N C N N N N N N N N C C C C N N N N N G C N N C
4999617 4 53097 0 0 1.3272109e-14 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / I 0 0 0 0 0
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan 0 0 0.972222 0 1
20Chart 20 genome_pos contig_idx contig_pos Pred_Label CNN_pred CNN_prob Qual_filter (<30) Cov_filter (<5) G G G G G G G G G A G G A G G A G A G G G G G G G G G G G G G G N G N G N N G G
5029537 4 83017 1 1 1.0 0 0
nt_pos aa_pos muts / type MAF_filter (>0.85) Indel_filter (<0.33) MFAS_filter (1) MMCP_filter (5) CPN_filter (4,7)
nan nan . / I 0 1 -1 -1 -1
product protein_id locustag Fix_filter Whether_recomb Freq_ambigious Gap_filter WD_pred
nan nan nan -1 0 0.882353 0 0